Detailed information of SNP:
|
SNP ID:
sf1107893764(Gbrowse)
Chromosome: chr11 Position: 7893764 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.21% | 36.79% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107893764 | A->G | LOC_Os11g14150(LOC_Os11g14150.1) | INTRON |