Detailed information of SNP:
|
SNP ID:
sf1107897005(Gbrowse)
Chromosome: chr11 Position: 7897005 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1263 | 91.61% | 8.39% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 355 | 72.11% | 27.89% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 233 | 85.41% | 14.59% |
| Tropical Japonica | 73 | 42.47% | 57.53% |
| Japonica Intermediate | 49 | 53.06% | 46.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107897005 | T->C | LOC_Os11g14160(LOC_Os11g14160.1) | Non-Synonymous SNP |