Detailed information of SNP:
|
SNP ID:
sf1107943152(Gbrowse)
Chromosome: chr11 Position: 7943152 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.30% | 11.70% |
| All Indica | 799 | 80.98% | 19.02% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1107943152 | A->C | INTERGENIC | None |