Detailed information of SNP:
|
SNP ID:
sf1108046521(Gbrowse)
Chromosome: chr11 Position: 8046521 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 61.01% | 38.99% |
| All Indica | 790 | 32.91% | 67.09% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 30.89% | 69.11% |
| Indica II | 211 | 22.27% | 77.73% |
| Indica Intermediate | 210 | 47.14% | 52.86% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108046521 | C->T | LOC_Os11g14340(LOC_Os11g14340.1) | Synonymous |