Detailed information of SNP:
|
SNP ID:
sf1108059834(Gbrowse)
Chromosome: chr11 Position: 8059834 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.39% | 46.61% |
| All Indica | 799 | 21.40% | 78.60% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 19.47% | 80.53% |
| Indica II | 213 | 15.49% | 84.51% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108059834 | G->A | LOC_Os11g14360(LOC_Os11g14360.1) | INTRON |