Detailed information of SNP:
|
SNP ID:
sf1108060507(Gbrowse)
Chromosome: chr11 Position: 8060507 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 57.86% | 42.14% |
| All Indica | 794 | 27.96% | 72.04% |
| All Japonica | 495 | 97.17% | 2.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 24.60% | 75.40% |
| Indica II | 211 | 19.43% | 80.57% |
| Indica Intermediate | 209 | 42.58% | 57.42% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108060507 | C->A | LOC_Os11g14360(LOC_Os11g14360.1) | Non-Synonymous SNP |