Detailed information of SNP:
|
SNP ID:
sf1108100075(Gbrowse)
Chromosome: chr11 Position: 8100075 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.35% | 41.65% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108100075 | G->A | LOC_Os11g14430(LOC_Os11g14430.1) | Synonymous |
| sf1108100075 | G->A | LOC_Os11g14430(LOC_Os11g14430.2) | Synonymous |