Detailed information of SNP:
|
SNP ID:
sf1108107616(Gbrowse)
Chromosome: chr11 Position: 8107616 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 95.82% | 4.18% |
| All Indica | 768 | 92.97% | 7.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 91.46% | 8.54% |
| Indica II | 206 | 96.60% | 3.40% |
| Indica Intermediate | 199 | 91.96% | 8.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108107616 | G->A | INTERGENIC | None |