Detailed information of SNP:
|
SNP ID:
sf1108107673(Gbrowse)
Chromosome: chr11 Position: 8107673 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 58.64% | 41.36% |
| All Indica | 792 | 32.83% | 67.17% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 370 | 34.32% | 65.68% |
| Indica II | 212 | 25.94% | 74.06% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108107673 | T->C | INTERGENIC | None |