Detailed information of SNP:
|
SNP ID:
sf1108107910(Gbrowse)
Chromosome: chr11 Position: 8107910 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 58.76% | 41.24% |
| All Indica | 778 | 31.88% | 68.12% |
| All Japonica | 480 | 97.71% | 2.29% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 364 | 34.07% | 65.93% |
| Indica II | 209 | 24.88% | 75.12% |
| Indica Intermediate | 205 | 35.12% | 64.88% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 81 | 93.83% | 6.17% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108107910 | C->T | LOC_Os11g14450(LOC_Os11g14450.1) | INTRON |