Detailed information of SNP:
|
SNP ID:
sf1108115760(Gbrowse)
Chromosome: chr11 Position: 8115760 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 65.07% | 34.93% |
| All Indica | 746 | 38.47% | 61.53% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 63 | 90.48% | 9.52% |
| Indica I | 354 | 46.33% | 53.67% |
| Indica II | 199 | 25.13% | 74.87% |
| Indica Intermediate | 193 | 37.82% | 62.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108115760 | T->C | LOC_Os11g14460(LOC_Os11g14460.1) | INTRON |