Detailed information of SNP:
|
SNP ID:
sf1108142344(Gbrowse)
Chromosome: chr11 Position: 8142344 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 53.53% | 46.47% |
| All Indica | 784 | 24.49% | 75.51% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 369 | 24.66% | 75.34% |
| Indica II | 210 | 23.81% | 76.19% |
| Indica Intermediate | 205 | 24.88% | 75.12% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108142344 | C->T | LOC_Os11g14510(LOC_Os11g14510.1) | Non-Synonymous SNP |