Detailed information of SNP:
|
SNP ID:
sf1108156072(Gbrowse)
Chromosome: chr11 Position: 8156072 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.49% | 43.51% |
| All Indica | 798 | 93.86% | 6.14% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108156072 | G->A | INTERGENIC | None |