Detailed information of SNP:
SNP ID:
sf1108156072(Gbrowse)
Chromosome: chr11 Position: 8156072 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 56.49% | 43.51% |
All Indica | 798 | 93.86% | 6.14% |
All Japonica | 497 | 3.42% | 96.58% |
Aus | 67 | 22.39% | 77.61% |
Indica I | 374 | 90.91% | 9.09% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 94.31% | 5.69% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 7.45% | 92.55% |
Japonica Intermediate | 68 | 10.29% | 89.71% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1108156072 | G->A | INTERGENIC | None |