Detailed information of SNP:
|
SNP ID:
sf1108181690(Gbrowse)
Chromosome: chr11 Position: 8181690 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 50.89% | 49.11% |
| All Indica | 783 | 20.69% | 79.31% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 367 | 24.80% | 75.20% |
| Indica II | 210 | 14.76% | 85.24% |
| Indica Intermediate | 206 | 19.42% | 80.58% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108181690 | C->T | LOC_Os11g14560(LOC_Os11g14560.1) | INTRON |