Detailed information of SNP:
SNP ID:
sf1108219131(Gbrowse)
Chromosome: chr11 Position: 8219131 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1364 | 72.80% | 27.20% |
All Indica | 796 | 94.35% | 5.65% |
All Japonica | 453 | 31.13% | 68.87% |
Aus | 62 | 98.39% | 1.61% |
Indica I | 373 | 91.69% | 8.31% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 210 | 95.24% | 4.76% |
Temperate Japonica | 304 | 17.43% | 82.57% |
Tropical Japonica | 88 | 70.45% | 29.55% |
Japonica Intermediate | 61 | 42.62% | 57.38% |
Group VI/Aromatic | 14 | 57.14% | 42.86% |
Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1108219131 | A->G | LOC_Os11g14600(LOC_Os11g14600.1) | Synonymous |