Detailed information of SNP:
|
SNP ID:
sf1108220133(Gbrowse)
Chromosome: chr11 Position: 8220133 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1363 | 95.38% | 4.62% |
| All Indica | 756 | 92.99% | 7.01% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 356 | 91.01% | 8.99% |
| Indica II | 201 | 91.54% | 8.46% |
| Indica Intermediate | 199 | 97.99% | 2.01% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108220133 | A->G | INTERGENIC | None |