Detailed information of SNP:
|
SNP ID:
sf1108247302(Gbrowse)
Chromosome: chr11 Position: 8247302 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 61.33% | 38.67% |
| All Indica | 780 | 34.49% | 65.51% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 367 | 29.97% | 70.03% |
| Indica II | 210 | 38.57% | 61.43% |
| Indica Intermediate | 203 | 38.42% | 61.58% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108247302 | G->A | LOC_Os11g14640(LOC_Os11g14640.1) | INTRON |