Detailed information of SNP:
|
SNP ID:
sf1108249618(Gbrowse)
Chromosome: chr11 Position: 8249618 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 95.60% | 4.40% |
| All Indica | 790 | 93.04% | 6.96% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 93.51% | 6.49% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108249618 | A->G | LOC_Os11g14650(LOC_Os11g14650.1) | Non-Synonymous SNP |