Detailed information of SNP:
|
SNP ID:
sf1108333061(Gbrowse)
Chromosome: chr11 Position: 8333061 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 57.64% | 42.36% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 481 | 3.95% | 96.05% |
| Aus | 65 | 21.54% | 78.46% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 80 | 12.50% | 87.50% |
| Japonica Intermediate | 66 | 6.06% | 93.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108333061 | A->G | INTERGENIC | None |