Detailed information of SNP:
|
SNP ID:
sf1108338028(Gbrowse)
Chromosome: chr11 Position: 8338028 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.11% | 36.89% |
| All Indica | 795 | 48.18% | 51.82% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 30.75% | 69.25% |
| Indica II | 211 | 74.41% | 25.59% |
| Indica Intermediate | 210 | 52.86% | 47.14% |
| Temperate Japonica | 335 | 88.36% | 11.64% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108338028 | C->T | LOC_Os11g14820(LOC_Os11g14820.1) | Synonymous |