Detailed information of SNP:
|
SNP ID:
sf1108339994(Gbrowse)
Chromosome: chr11 Position: 8339994 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 50.96% | 49.04% |
| All Indica | 790 | 17.85% | 82.15% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 371 | 20.22% | 79.78% |
| Indica II | 212 | 15.57% | 84.43% |
| Indica Intermediate | 207 | 15.94% | 84.06% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108339994 | A->G | LOC_Os11g14830(LOC_Os11g14830.1) | Non-Synonymous SNP |