Detailed information of SNP:
|
SNP ID:
sf1108344284(Gbrowse)
Chromosome: chr11 Position: 8344284 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 53.27% | 46.73% |
| All Indica | 782 | 23.40% | 76.60% |
| All Japonica | 492 | 94.72% | 5.28% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 365 | 32.33% | 67.67% |
| Indica II | 210 | 11.90% | 88.10% |
| Indica Intermediate | 207 | 19.32% | 80.68% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 91 | 79.12% | 20.88% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108344284 | G->T | LOC_Os11g14840(LOC_Os11g14840.1) | Non-Synonymous SNP |