Detailed information of SNP:
|
SNP ID:
sf1108345434(Gbrowse)
Chromosome: chr11 Position: 8345434 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 55.38% | 44.62% |
| All Indica | 757 | 23.25% | 76.75% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 355 | 32.68% | 67.32% |
| Indica II | 207 | 12.08% | 87.92% |
| Indica Intermediate | 195 | 17.95% | 82.05% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108345434 | C->T | INTERGENIC | None |