Detailed information of SNP:
SNP ID:
sf1108486182(Gbrowse)
Chromosome: chr11 Position: 8486182 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 57.90% | 42.10% |
All Indica | 798 | 93.86% | 6.14% |
All Japonica | 497 | 7.24% | 92.76% |
Aus | 67 | 19.40% | 80.60% |
Indica I | 375 | 90.93% | 9.07% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 210 | 93.81% | 6.19% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 26.60% | 73.40% |
Japonica Intermediate | 68 | 8.82% | 91.18% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1108486182 | T->G | INTERGENIC | None |