Detailed information of SNP:
|
SNP ID:
sf1108492543(Gbrowse)
Chromosome: chr11 Position: 8492543 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 96.10% | 3.90% |
| All Indica | 769 | 92.98% | 7.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 362 | 92.27% | 7.73% |
| Indica II | 206 | 93.20% | 6.80% |
| Indica Intermediate | 201 | 94.03% | 5.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108492543 | G->A | LOC_Os11g15090(LOC_Os11g15090.1) | Synonymous |