Detailed information of SNP:
|
SNP ID:
sf1108497850(Gbrowse)
Chromosome: chr11 Position: 8497850 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 91.79% | 8.21% |
| All Indica | 733 | 84.99% | 15.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 344 | 84.59% | 15.41% |
| Indica II | 191 | 85.86% | 14.14% |
| Indica Intermediate | 198 | 84.85% | 15.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108497850 | C->T | INTERGENIC | None |