Detailed information of SNP:
|
SNP ID:
sf1108498297(Gbrowse)
Chromosome: chr11 Position: 8498297 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 96.77% | 3.23% |
| All Indica | 775 | 95.23% | 4.77% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 95.58% | 4.42% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 203 | 93.60% | 6.40% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108498297 | G->T | INTERGENIC | None |