Detailed information of SNP:
|
SNP ID:
sf1108500602(Gbrowse)
Chromosome: chr11 Position: 8500602 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 52.97% | 47.03% |
| All Indica | 769 | 88.43% | 11.57% |
| All Japonica | 492 | 4.88% | 95.12% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 362 | 85.36% | 14.64% |
| Indica II | 203 | 93.60% | 6.40% |
| Indica Intermediate | 204 | 88.73% | 11.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 90 | 16.67% | 83.33% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108500602 | A->T | INTERGENIC | None |