Detailed information of SNP:
|
SNP ID:
sf1108512105(Gbrowse)
Chromosome: chr11 Position: 8512105 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.31% | 6.69% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108512105 | C->T | INTERGENIC | None |