Detailed information of SNP:
|
SNP ID:
sf1108526566(Gbrowse)
Chromosome: chr11 Position: 8526566 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1293 | 91.42% | 8.58% |
| All Indica | 787 | 99.87% | 0.13% |
| All Japonica | 391 | 74.68% | 25.32% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 365 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 264 | 79.92% | 20.08% |
| Tropical Japonica | 71 | 54.93% | 45.07% |
| Japonica Intermediate | 56 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108526566 | C->T | INTERGENIC | None |