Detailed information of SNP:
|
SNP ID:
sf1108543104(Gbrowse)
Chromosome: chr11 Position: 8543104 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 50.41% | 49.59% |
| All Indica | 746 | 79.89% | 20.11% |
| All Japonica | 481 | 10.19% | 89.81% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 349 | 75.64% | 24.36% |
| Indica II | 201 | 86.57% | 13.43% |
| Indica Intermediate | 196 | 80.61% | 19.39% |
| Temperate Japonica | 333 | 4.20% | 95.80% |
| Tropical Japonica | 82 | 28.05% | 71.95% |
| Japonica Intermediate | 66 | 18.18% | 81.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 36 | 47.22% | 52.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108543104 | G->T | LOC_Os11g15170(LOC_Os11g15170.1) | Synonymous |