Detailed information of SNP:
|
SNP ID:
sf1108576209(Gbrowse)
Chromosome: chr11 Position: 8576209 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 58.93% | 41.07% |
| All Indica | 797 | 32.87% | 67.13% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 212 | 47.64% | 52.36% |
| Indica Intermediate | 210 | 42.86% | 57.14% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108576209 | G->A | INTERGENIC | None |