Detailed information of SNP:
|
SNP ID:
sf1108594934(Gbrowse)
Chromosome: chr11 Position: 8594934 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 71.82% | 28.18% |
| All Indica | 798 | 54.64% | 45.36% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 39.47% | 60.53% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108594934 | G->A | INTERGENIC | None |