Detailed information of SNP:
|
SNP ID:
sf1108621282(Gbrowse)
Chromosome: chr11 Position: 8621282 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 96.08% | 3.92% |
| All Indica | 788 | 96.07% | 3.93% |
| All Japonica | 491 | 96.13% | 3.87% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 366 | 93.72% | 6.28% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 85.39% | 14.61% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108621282 | C->T | LOC_Os11g15270(LOC_Os11g15270.1) | Synonymous |