Detailed information of SNP:
|
SNP ID:
sf1108625722(Gbrowse)
Chromosome: chr11 Position: 8625722 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 56.81% | 43.19% |
| All Indica | 767 | 25.95% | 74.05% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 367 | 24.25% | 75.75% |
| Indica II | 201 | 28.86% | 71.14% |
| Indica Intermediate | 199 | 26.13% | 73.87% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108625722 | G->A | INTERGENIC | None |