Detailed information of SNP:
|
SNP ID:
sf1108642831(Gbrowse)
Chromosome: chr11 Position: 8642831 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 69.72% | 30.28% |
| All Indica | 779 | 47.24% | 52.76% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 34.05% | 65.95% |
| Indica II | 207 | 67.15% | 32.85% |
| Indica Intermediate | 202 | 50.99% | 49.01% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108642831 | C->T | INTERGENIC | None |