Detailed information of SNP:
|
SNP ID:
sf1108664719(Gbrowse)
Chromosome: chr11 Position: 8664719 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 57.83% | 42.17% |
| All Indica | 785 | 93.38% | 6.62% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 209 | 90.91% | 9.09% |
| Indica Intermediate | 202 | 94.06% | 5.94% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108664719 | C->G | INTERGENIC | None |