Detailed information of SNP:
|
SNP ID:
sf1108665835(Gbrowse)
Chromosome: chr11 Position: 8665835 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 55.06% | 44.94% |
| All Indica | 783 | 87.99% | 12.01% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 205 | 89.76% | 10.24% |
| Indica Intermediate | 206 | 83.50% | 16.50% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108665835 | T->C | INTERGENIC | None |