Detailed information of SNP:
|
SNP ID:
sf1108666278(Gbrowse)
Chromosome: chr11 Position: 8666278 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1282 | 87.91% | 12.09% |
| All Indica | 667 | 78.56% | 21.44% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 298 | 77.18% | 22.82% |
| Indica II | 182 | 77.47% | 22.53% |
| Indica Intermediate | 187 | 81.82% | 18.18% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108666278 | T->C | INTERGENIC | None |