Detailed information of SNP:
|
SNP ID:
sf1108671678(Gbrowse)
Chromosome: chr11 Position: 8671678 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 57.90% | 42.10% |
| All Indica | 791 | 94.18% | 5.82% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108671678 | T->C | INTERGENIC | None |