Detailed information of SNP:
|
SNP ID:
sf1108720125(Gbrowse)
Chromosome: chr11 Position: 8720125 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 54.64% | 45.36% |
| All Indica | 782 | 28.64% | 71.36% |
| All Japonica | 496 | 90.93% | 9.07% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 371 | 18.33% | 81.67% |
| Indica II | 208 | 41.83% | 58.17% |
| Indica Intermediate | 203 | 33.99% | 66.01% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108720125 | C->T | LOC_Os11g15400(LOC_Os11g15400.1) | Non-Synonymous SNP |