Detailed information of SNP:
|
SNP ID:
sf1108739192(Gbrowse)
Chromosome: chr11 Position: 8739192 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 90.88% | 9.12% |
| All Indica | 794 | 86.27% | 13.73% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 86.06% | 13.94% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108739192 | A->G | LOC_Os11g15430(LOC_Os11g15430.1) | Synonymous |