Detailed information of SNP:
|
SNP ID:
sf1108747467(Gbrowse)
Chromosome: chr11 Position: 8747467 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 96.81% | 3.19% |
| All Indica | 785 | 94.78% | 5.22% |
| All Japonica | 475 | 99.79% | 0.21% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 202 | 88.12% | 11.88% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 319 | 99.69% | 0.31% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108747467 | C->T | LOC_Os11g15440(LOC_Os11g15440.1) | INTRON |