Detailed information of SNP:
|
SNP ID:
sf1108791038(Gbrowse)
Chromosome: chr11 Position: 8791038 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 59.68% | 40.32% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 496 | 6.45% | 93.55% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108791038 | C->T | LOC_Os11g15520(LOC_Os11g15520.1) | INTRON |