Detailed information of SNP:
|
SNP ID:
sf1108794032(Gbrowse)
Chromosome: chr11 Position: 8794032 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 61.17% | 38.83% |
| All Indica | 767 | 33.38% | 66.62% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 361 | 26.59% | 73.41% |
| Indica II | 206 | 44.17% | 55.83% |
| Indica Intermediate | 200 | 34.50% | 65.50% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108794032 | A->C | INTERGENIC | None |