Detailed information of SNP:
|
SNP ID:
sf1108795347(Gbrowse)
Chromosome: chr11 Position: 8795347 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 54.45% | 45.55% |
| All Indica | 786 | 87.02% | 12.98% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 367 | 86.65% | 13.35% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108795347 | A->G | INTERGENIC | None |