Detailed information of SNP:
|
SNP ID:
sf1108797292(Gbrowse)
Chromosome: chr11 Position: 8797292 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 57.67% | 42.33% |
| All Indica | 795 | 92.58% | 7.42% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 373 | 91.69% | 8.31% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108797292 | C->T | INTERGENIC | None |