Detailed information of SNP:
|
SNP ID:
sf1108871344(Gbrowse)
Chromosome: chr11 Position: 8871344 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 97.10% | 2.90% |
| All Indica | 772 | 95.47% | 4.53% |
| All Japonica | 485 | 98.97% | 1.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 97.51% | 2.49% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 205 | 92.20% | 7.80% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 84 | 97.62% | 2.38% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108871344 | G->A | INTERGENIC | None |