Detailed information of SNP:
|
SNP ID:
sf1108916567(Gbrowse)
Chromosome: chr11 Position: 8916567 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1366 | 55.86% | 44.14% |
| All Indica | 754 | 25.99% | 74.01% |
| All Japonica | 492 | 95.73% | 4.27% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 353 | 26.06% | 73.94% |
| Indica II | 204 | 25.49% | 74.51% |
| Indica Intermediate | 197 | 26.40% | 73.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 78.65% | 21.35% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1108916567 | T->C | LOC_Os11g15750(LOC_Os11g15750.1) | INTRON |