Detailed information of SNP:
|
SNP ID:
sf1109002293(Gbrowse)
Chromosome: chr11 Position: 9002293 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.84% | 21.16% |
| All Indica | 799 | 67.83% | 32.17% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 63.73% | 36.27% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1109002293 | G->A | LOC_Os11g16330(LOC_Os11g16330.1) | INTRON |
| sf1109002293 | G->A | LOC_Os11g16330(LOC_Os11g16330.4) | INTRON |
| sf1109002293 | G->A | LOC_Os11g16330(LOC_Os11g16330.2) | INTRON |